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August 25, 2025

**Job Description**
This PhD position is tailored for a motivated candidate passionate about the intersection of computational science, machine learning, and drug discovery. The role focuses on pushing the boundaries of structure-based drug design using cutting-edge machine learning techniques, involving the development of state-of-the-art machine learning models for the analysis of chemical or biochemical data related to structural biology.

**Skills & Abilities**
• Hands-on experience developing state-of-the-art machine learning models, particularly deep neural networks.
• Experience with graph neural networks (highly valued).
• Background including past or present projects centered on machine learning analysis of chemical or biochemical data, especially relating to structural biology.
• Ample experience with Python programming.
• Demonstrable experience with popular machine learning frameworks such as PyTorch or scikit-learn.
• Familiarity with the PyTorch Geometric library (preferred).
• Experience with molecular dynamics simulations or molecular docking studies (preferred).
• Experience with protein structure predictions methods and co-folding methods (e.g., AlphaFold or Boltz models) (preferred).
• Strong software development skills in Python, including software package development (preferred).

**Qualifications**
Required Degree(s) in:
• Computer Science
• Computational Chemistry
• Bioinformatics
• Cheminformatics

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Work Level
Ph.D
Employment Type
Full-time, Scholarship
Valid Until
January 31, 2026
Details
Full-time Remote Work: No Brief location description: Onsite-based
School / Department / Center / Lab
• Department of Informatics and Chemistry
Supervisor Email
See Details
University of Chemistry and Technology, Prague (UCT Prague)
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